Python Module Index

a | j


	a
	`apps`
	`apps.pilot`
	`apps.pilot.jadolfbr`
	`apps.public`
	`apps.public.antibody_benchmark_utils`
	`apps.public.antibody_utils`
	`apps.public.general`
	`apps.public.pdb_utils`
	`apps.public.pyrosetta`
	`apps.public.rosetta`

	j
	`jade`
	`jade.antibody`
	`jade.antibody.ab_db`
	`jade.antibody.cdr_data`
	`jade.antibody.cdr_data.CDRData`
	`jade.antibody.cdr_data.CDRDataTypes`
	`jade.antibody.CDRClusterer`
	`jade.antibody.ClusterData`
	`jade.antibody.decoy_data`
	`jade.antibody.decoy_data.DecoyData`
	`jade.antibody.decoy_data.DecoyDataTypes`
	`jade.antibody.outliers`
	`jade.antibody.split_structure`
	`jade.antibody.util`
	`jade.basic`
	`jade.basic.filters`
	`jade.basic.filters.DataFilter`
	`jade.basic.filters.DataFilters`
	`jade.basic.filters.FilterSettings`
	`jade.basic.general`
	`jade.basic.numeric`
	`jade.basic.pandas`
	`jade.basic.pandas.PandasDataFrame`
	`jade.basic.pandas.stats`
	`jade.basic.path`
	`jade.basic.plotting`
	`jade.basic.plotting.correlations`
	`jade.basic.plotting.error_bars`
	`jade.basic.plotting.MakeFigure`
	`jade.basic.RestypeDefinitions`
	`jade.basic.sequence`
	`jade.basic.sequence.ClustalRunner`
	`jade.basic.sequence.fasta`
	`jade.basic.sequence.PDBConsensusInfo`
	`jade.basic.sequence.SequenceInfo`
	`jade.basic.sequence.SequenceResults`
	`jade.basic.sequence.SequenceStats`
	`jade.basic.sql`
	`jade.basic.sql.StatementCreator`
	`jade.basic.structure`
	`jade.basic.structure.BasicPose`
	`jade.basic.structure.BioPose`
	`jade.basic.structure.SQLPose`
	`jade.basic.structure.Structure`
	`jade.basic.structure.util`
	`jade.basic.threading`
	`jade.basic.threading.JobDistributor`
	`jade.basic.threading.Threader`
	`jade.basic.TKinter`
	`jade.basic.TKinter.ImageFrame`
	`jade.basic.TKinter.Listbox`
	`jade.clustering`
	`jade.clustering.CaliburRunner`
	`jade.machine_learning`
	`jade.machine_learning.util`
	`jade.nnk`
	`jade.nnk.NNKAbMaturation`
	`jade.nnk.NNKEnrichments`
	`jade.pymol_jade`
	`jade.pymol_jade.PyMolScriptWriter`
	`jade.RAbD`
	`jade.RAbD.AnalyzeAntibodyDesigns`
	`jade.RAbD.window_main`
	`jade.RAbD.window_main.AnalysisFrame`
	`jade.RAbD.window_main.CompareStrategiesFrame`
	`jade.RAbD.window_main.FeaturesFrame`
	`jade.RAbD.window_main.menu`
	`jade.RAbD.window_modules`
	`jade.RAbD.window_modules.FilterSettingsWindow`
	`jade.RAbD_BM`
	`jade.RAbD_BM.AnalysisInfo`
	`jade.RAbD_BM.AnalyzeRecovery`
	`jade.RAbD_BM.benchmark_plotting`
	`jade.RAbD_BM.recovery_rr_tools`
	`jade.RAbD_BM.RunBenchmarksRAbD`
	`jade.RAbD_BM.tools`
	`jade.RAbD_BM.tools_ab_db`
	`jade.RAbD_BM.tools_features_db`
	`jade.rosetta_jade`
	`jade.rosetta_jade.alignment`
	`jade.rosetta_jade.BenchmarkInfo`
	`jade.rosetta_jade.features`
	`jade.rosetta_jade.FeaturesJsonCreator`
	`jade.rosetta_jade.flag_util`
	`jade.rosetta_jade.monte_carlo_analysis`
	`jade.rosetta_jade.monte_carlo_analysis.AnalyzeMCAcceptance`
	`jade.rosetta_jade.monte_carlo_analysis.CycleData`
	`jade.rosetta_jade.monte_carlo_analysis.MCData`
	`jade.rosetta_jade.RunRosetta`
	`jade.rosetta_jade.RunRosettaBenchmarks`
	`jade.rosetta_jade.score_util`
	`jade.rosetta_jade.ScoreFiles`
	`jade.rosetta_jade.SetupRosettaOptionsBenchmark`
	`jade.rosetta_jade.SetupRosettaOptionsGeneral`
	`jade.rosetta_jade.structure_editing`
	`jade.utility`
	`jade.utility.string_util`