class jade.basic.sequence.SequenceStats.SequenceStats(sequence_list)

Class for getting data from an array of strings of sequences (one letter code) of equal length.

compute_stats()

Compute frequency and probability (0-1) for each position for each amino acid

get_consensus_sequence()

get_frequency(position, aa)

get_probability(position, aa)

Get probability of the current position (starting from 0) and aa

init_data_map()

Sets all probabilities 0 and appends each map to the stats vector

return_initialized_total_map()

set_sequences(sequence_list)

Set a sequence list