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class
jade.basic.sequence.PDBConsensusInfo.
PDBConsensusInfo
(resinfo_list)[source]¶ Class to compute frequency and probability from an array of PDBInfo classes. The sequences within PDBInfo do not necessarily need to be the same length. A given sequence position is identified and stored in the data maps by its [pdb_num, chain, and icode] -> Use get_position_from_residue(residue) to get this position from a Residue instance.
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compute_stats
()[source]¶ Compute frequency and probability (0-1) for each position for each amino acid
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get_probability
(residue, aa)[source]¶ Get probability of the current position (starting from 0) and aa
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