class jade.clustering.CaliburRunner.CaliburWrapper(caliburPath=<type 'set'>)[source]
ret_centers()[source]

return array of top 2 clusters, and a corresponding array of sizes.

ret_neighbors(resultsPath)[source]
ret_random_num_neighbors()[source]
ret_threshold()[source]

Returns threshold used in analysis.

run_calibur(PDBLIST_Path, chain=False, Nter=False, Cter=False, threshold=0)[source]

Nter, Cter are not residue numbering - pretty much it is rosetta numbering as far as I can tell… Need to do this better with option type thing..

save_neighbors(resultsPath, center)[source]
save_random_num_neighbors()[source]