class jade.rosetta_jade.RunRosetta.RunRosetta(program=None, parser=None, db_mode=False, json_run=None)

Bases: object

local_run(*args, **kwargs)

Get if we are running locally :rtype: bool

run(*args, **kwargs)

jade.rosetta_jade.RunRosetta.get_option_strings(cmd)

Get the options as a string to be printed or saved to a file. :param cmd: :rtype: str

jade.rosetta_jade.RunRosetta.print_full_cmd(cmd, script_path=None)

jade.rosetta_jade.RunRosetta.run_on_qsub(cmd, queue_dir, name, print_only=False, extra_opts='')

jade.rosetta_jade.RunRosetta.run_on_slurm(cmd, queue_dir, name, nodes=False, ntasks=None, print_only=False, extra_opts='')

jade.rosetta_jade.RunRosetta.write_queue_file(cmd, queue_dir, name)