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class
jade.antibody.CDRClusterer.
CDRClusterer
(bio_pose)[source]¶ A simple class for calculating a CDRs cluster from dihedrals or a renumbered pose.
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get_fullcluster
(cdr_name, chain=None, region=None)[source]¶ IF DIHEDRALS is SET - AKA from before using the same class - WILL USE THE SAME DIHEDRALS AS BEFORE Rewritten from C++ code. Identifies the cluster of a known cdr type given either custom dihedrals or dihedrals calculated from a pose. Returns a pair or [cdr_cluster, distance] region is [int start, int end, chain] - This way you can cluster without renumbering if you want.
Return type: list[str, float]
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set_custom_dihedrals
(dihedrals)[source]¶ Dihedrals is a dict: [‘phi’]=[x, y, z]; [‘psi’] = [x, y, z]; [‘omega’] = [x, y, z (degrees)]
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