apps.pilot.jadolfbr¶

copy_top_each_strategy.py¶

usage: copy_top_each_strategy.py [-h] [-n N] -i INDIR -o OUTDIR
                                 [-s [STRATEGIES [STRATEGIES ...]]]

Named Arguments¶

`-n`	Number of models to copy. DEFAULT = 2 Default: 2
`-i, --indir`	Input directory
`-o, --outdir`	Output directory
`-s, --strategies`
	The type of strategies we are interested in Default: [‘delta_unsats_per_1000_dSASA’, ‘dG_top_Ptotal’]

glycan_basic_LCM_protocol.py¶

usage: glycan_basic_LCM_protocol.py [-h] --infile INFILE
                                    --glycosylation_position
                                    GLYCOSYLATION_POSITION
                                    [--glycosylation_name GLYCOSYLATION_NAME]
                                    [--nstruct NSTRUCT] [--cycles CYCLES]

Named Arguments¶

`--infile, -s`	Input PDB.
`--glycosylation_position, -g`
	Glycosylation site. Rosetta resnum or resnumChain, ex: 463G
`--glycosylation_name, -n`
	Glycosylation name Default: “man5”
`--nstruct`	Number of output structures Default: 1
`--cycles, -c`	Total number of cycles to attempt using the LCM Default: 75