jade.antibody.split_structure.has_Fc(parent_PDB)

jade.antibody.split_structure.has_chain(pdb_map, chain)

jade.antibody.split_structure.message(pdb_name, type)

jade.antibody.split_structure.run_main(ab_dir, output_dir, only_dimer=True)

jade.antibody.split_structure.run_split_proto_CDR4(ab_dir, output_dir, overhang=0, skip_present=False)

jade.antibody.split_structure.run_split_proto_CDR4_by_gene(db, ab_dir, output_dir, overhang=0, skip_present=False, res_cutoff=2.8, rfac_cutoff=0.3)

jade.antibody.split_structure.separate_pdb(pdb_path, output_dir, only_dimer=True)

Determine if we have Fv or FAB. If FAB, split into parts: Fc, Fv, linker.

jade.antibody.split_structure.separate_proto_CDR4(pdb_path, output_dir, chain, overhang=0, skip_present=True)

jade.antibody.split_structure.split_CDR4(parent_PDB, chain, overhang=0)

jade.antibody.split_structure.split_Fc(parent_PDB)

Split Fc from FAB. Return new pdb_map to save

jade.antibody.split_structure.split_Fv(parent_PDB)

Split Fv from FAB. Return new pdb_map to save

jade.antibody.split_structure.split_linker(parent_PDB)

Split 4 Residue linker from FAB. Linker may be longer than this, but I think this is about it.

jade.antibody.split_structure.split_linker_H(parent_PDB)

Split 4 Residue linker from FAB. Linker may be longer than this, but I think this is about it.

jade.antibody.split_structure.split_linker_L(parent_PDB)

Split 4 Residue linker from FAB. Linker may be longer than this, but I think this is about it.