class jade.RAbD_BM.RunBenchmarksRAbD.RunBenchmarksRAbD[source]

Bases: jade.rosetta_jade.RunRosettaBenchmarks.RunRosettaBenchmarks

Benchmark class specifically for RAbD

Details:

ALL INPUT PDBs should go into

project_root/datasets

Typically, you will have multiple directories - native, relaxed, etc.

This is specified as a benchmark using ‘input_pdb_type’ in your json file.

ALL PDBLISTs for benchmarking should go into

project_root/datasets/pdblists
run_benchmark(benchmark_names, benchmark_options)[source]

Run a single benchmark with options.

Parameters:
  • benchmark_names – List of benchmark names
  • benchmark_options – List of benchmark options
Returns: