class jade.basic.sequence.SequenceResults.SequenceResults[source]

Simple class for holding, calculating, + accessing result data Residue Numbers are in Rosetta numbering.

Original class for sequence stats. Basically deprecated by SequenceStats and PDBConsensusInfo.

add_reference_residue(resnum, one_letter_code)[source]
add_residue(resnum, one_letter_code, decoy)[source]
get_all_mutated_positions()[source]
get_all_reference_percent_observed()[source]

Returns array of tripplets of [postion, one_letter_code, percent] of reference amino acid found.

get_all_residue_numbers()[source]
get_all_residues_observed(resnum)[source]
get_decoys_with_aa(resnum, one_letter_code)[source]

Returns all decoys with a specific mutation at a position.

get_decoys_with_joint_aa(resnum_one_letter_code_pair)[source]

Will output decoys that have x, y, z mutations at positions a, b, c

get_freq(resnum, one_letter_code)[source]
get_percent(resnum, one_letter_code)[source]
get_percent_string(resnum, one_letter_code)[source]
get_reference_residue(resnum)[source]
get_total(resnum)[source]