class jade.antibody.ClusterData.CDRClusterData(ab_db, cdr_dir, limit_to_known=True)[source]

Bases: jade.antibody.ClusterData.Data

get_cdr_names()[source]
get_cdr_paths()[source]

Get the CDR path using the cdr directory

get_center_data()[source]
get_center_name()[source]
get_center_path()[source]
get_data()[source]
get_extra_data()[source]
get_infos()[source]
get_original_chain()[source]
get_pdb()[source]
has_center_data()[source]
Returns:boolean
load_data(cdr, length, cluster, extra_sele=[])[source]
class jade.antibody.ClusterData.CDRClusters(ab_db, cdr_dir, limit_to_known=True)[source]

Bases: jade.antibody.ClusterData.Data

get_cluster_data(cluster)[source]
Parameters:cluster – string
Returns:CDRClusterData
get_clusters()[source]
load_data(cdr, length, extra_sele=[])[source]
class jade.antibody.ClusterData.CDRData(ab_db, cdr_dir, limit_to_known=True)[source]

Bases: jade.antibody.ClusterData.Data

get_all_data()[source]
get_cluster_data(cdr_name, length, cluster)[source]
Parameters:
  • cdr_name – string
  • length – int
  • cluster – string
Returns:

CDRClusterData

get_clusters(cdr_name, length)[source]
get_clusters_data(cdr_name, length)[source]
Parameters:
  • cdr_name – string
  • length – int
Returns:

CDRClusters

get_lengths(cdr_name)[source]
Parameters:cdr_name – string
Returns:list
get_lengths_data(cdr_name)[source]
Parameters:cdr_name – string
Returns:CDRLengths
load_data(extra_sele=[])[source]
class jade.antibody.ClusterData.CDRLengths(ab_db, cdr_dir, limit_to_known=True)[source]

Bases: jade.antibody.ClusterData.Data

get_clusters_data(length)[source]
Parameters:length – int
Returns:CDRCLusters
get_lengths()[source]
load_data(cdr, extra_sele=[])[source]
class jade.antibody.ClusterData.Data(ab_db, cdr_dir, limit_to_known=True)[source]
load_data(extra_sele='')[source]
set_res_cutoff(res_cutoff)[source]
set_rfac_cutoff(rfac_cutoff)[source]
class jade.antibody.ClusterData.Info(path, name, PDB, original_chain, cluster, dihedral_distance)[source]