public.pdb_utils¶

place_TERs.py¶

This script places ters between ATOM/HETATM columns. This is currently needed to reload symmetrized glycan posescreated by the god aweful make_symm_file.pl Rosetta script. USE: place_TERs.py my_pdb - Does it in place.

usage: place_TERs.py [-h] [pdb_files [pdb_files ...]]

Positional Arguments¶

pdb_files

Path to PDB files we will be stripping.

strip_ANISOU.py¶

Strips ANISOU lines out of PDBs.

usage: strip_ANISOU.py [-h] [pdb_files [pdb_files ...]]

Positional Arguments¶

pdb_files

Path to PDB file we will be stripping.

strip_ter.py¶

This simple script strips ters out of a PDB file and overwrites the input. PyMol places ters when th numbering is not 1-1. And then Rosetta will F your Shit up.

usage: bstrip_ter.py [-h] [pdb_files [pdb_files ...]]

Positional Arguments¶

pdb_files

Path to PDB file we will be stripping.