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class jade.antibody.decoy_data.DecoyDataTypes.CombinedStrDecoyData(filters, filt_name)[source]¶

DecoyData class that has value as a string of the 3 main scores. Value held in DecoyDataTriple is a string: dG::total::dSASA for reference.

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.DeltaUnsatsPerAreaDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.IntHbondDecoyData[source]¶

New way for int hbonds - added directly from IAM.

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.InterfaceHBondDecoyDataLoader[source]¶

DecoyData class that holds the number of LH_A or L_H interface Hbonds, and energies. Very Slow to get this information.

SO - Subsequent Hbond classes accept this on construction and then parse its information

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.InterfaceHbondCountDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.InterfaceHbondEnergyDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.SCValueDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.TotalDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.dGDecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.dGTotalScoreSubset[source]¶

dG of the top x percent of total score (for each strategy)

add_data(strategy, con, top_total_percent)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object

class jade.antibody.decoy_data.DecoyDataTypes.dSASADecoyData[source]¶

add_data(strategy, con)[source]¶: Baseclass method - needs to be overridden in subclass :param strategy: Strategy to which we are adding data. :param con: Sqlite3 Connection object