All modules for which code is available
- jade.RAbD.AnalyzeAntibodyDesigns
- jade.RAbD.window_main.AnalysisFrame
- jade.RAbD.window_main.CompareStrategiesFrame
- jade.RAbD.window_main.FeaturesFrame
- jade.RAbD.window_main.menu
- jade.RAbD.window_modules.FilterSettingsWindow
- jade.RAbD_BM.AnalysisInfo
- jade.RAbD_BM.AnalyzeRecovery
- jade.RAbD_BM.RunBenchmarksRAbD
- jade.RAbD_BM.benchmark_plotting
- jade.RAbD_BM.recovery_rr_tools
- jade.RAbD_BM.tools
- jade.RAbD_BM.tools_ab_db
- jade.RAbD_BM.tools_features_db
- jade.antibody.CDRClusterer
- jade.antibody.ClusterData
- jade.antibody.ab_db
- jade.antibody.cdr_data.CDRData
- jade.antibody.cdr_data.CDRDataTypes
- jade.antibody.decoy_data.DecoyData
- jade.antibody.decoy_data.DecoyDataTypes
- jade.antibody.outliers
- jade.antibody.split_structure
- jade.antibody.util
- jade.basic.RestypeDefinitions
- jade.basic.TKinter.ImageFrame
- jade.basic.TKinter.Listbox
- jade.basic.filters.DataFilter
- jade.basic.filters.DataFilters
- jade.basic.filters.FilterSettings
- jade.basic.general
- jade.basic.numeric
- jade.basic.pandas.PandasDataFrame
- jade.basic.pandas.stats
- jade.basic.path
- jade.basic.plotting.MakeFigure
- jade.basic.plotting.correlations
- jade.basic.plotting.error_bars
- jade.basic.sequence.ClustalRunner
- jade.basic.sequence.PDBConsensusInfo
- jade.basic.sequence.SequenceInfo
- jade.basic.sequence.SequenceResults
- jade.basic.sequence.SequenceStats
- jade.basic.sequence.fasta
- jade.basic.sql.StatementCreator
- jade.basic.structure.BasicPose
- jade.basic.structure.BioPose
- jade.basic.structure.SQLPose
- jade.basic.structure.Structure
- jade.basic.structure.util
- jade.basic.threading.JobDistributor
- jade.basic.threading.Threader
- jade.clustering.CaliburRunner
- jade.machine_learning.util
- jade.nnk.NNKAbMaturation
- jade.nnk.NNKEnrichments
- jade.pymol_jade.PyMolScriptWriter
- jade.rosetta_jade.BenchmarkInfo
- jade.rosetta_jade.FeaturesJsonCreator
- jade.rosetta_jade.RunRosetta
- jade.rosetta_jade.RunRosettaBenchmarks
- jade.rosetta_jade.ScoreFiles
- jade.rosetta_jade.SetupRosettaOptionsBenchmark
- jade.rosetta_jade.SetupRosettaOptionsGeneral
- jade.rosetta_jade.alignment
- jade.rosetta_jade.features
- jade.rosetta_jade.flag_util
- jade.rosetta_jade.monte_carlo_analysis.AnalyzeMCAcceptance
- jade.rosetta_jade.monte_carlo_analysis.CycleData
- jade.rosetta_jade.monte_carlo_analysis.MCData
- jade.rosetta_jade.score_util
- jade.utility